Determinations of chlorophyll a and in vivo fluorescence of photosynthetic
pigments were used to study vertical and horizontal distribution of phytopl
ankton in Lake Tanganyika (East Africa). Blue excited fluorescence (IVFb) w
as an approximate predictor of chlorophyll a at different depths and locati
ons. Green excited fluorescence (IVFg), which reflects phycoerythrin in cya
nobacteria, explained chlorophyll a variation equally well, and in combinat
ion with IVFb the degree of explanation was improved to 87% (n = 90). Parti
cularly during the shallow stratification in March-May, the maxima of chlor
ophyll a, IVFb and IVFg were located within the thermocline. Such distribut
ion may have resulted from the high penetration of UV light, often accentua
ted by very shallow daytime thermal stratification, leading to inhibition o
f phytoplankton near the surface. Because the decrease of chlorophyll a spe
cific IVFb was less striking towards the surface, the decrease of IVFb was
not caused by light inhibition only. In October-November, epilimnetic IVFb
and chlorophyll a values seemed to be consistently higher than in April-May
and often showed remarkable patchiness. The sometimes very dense phytoplan
kton blooms (Anabaena sp., Cyanobacteria) observed in the central and south
ern parts of the lake, suggest that local upwelling or mixing events may be
important for the development of phytoplankton in Lake Tanganyika.