Karyotype analysis by pulsed-field gel electrophoresis of several field iso
lates of Claviceps purpurea showed extensive variation in size and number o
f chromosomes. Analysis of F1-ascospore-lines of a cross between two field
isolates showing chromosome-length polymorphisms (CLPs) indicate that recom
bination during meiosis contributes considerably to this variability. In ad
dition, cytofluorometrical estimation of DNA content of single nuclei indic
ate that the C. purpurea strains vary in their ploidy level: most strains p
robably are +/- diploid, some appear to be haploid, others +/- triploid (wi
th varying degrees of aneuploidy). Benomyl treatment (as used, e.g. for 'ha
ploidization' in the parasexual cycle of imperfect fungi) of some field iso
lates confirmed that the differences in 4'-6-diamidino-2-phenylindol (DAPI)
-fluorescence correspond to different ploidy levels: derivatives with lower
nuclear DNA content could be isolated from the putatively nonhaploid strai
ns; a minimal value (even after repeated benomyl treatment) was obtained, c
orresponding to the lowest value of field isolates, probably representing t
he haploid status. Most of these strains are not impaired in fitness and ag
gressiveness and therefore can be used for the selection of recessive mutan
ts and for functional molecular studies.