The Markovian dynamics of a Brownian particle is derived in the case that t
he local temperature is a stochastic variable. The isolated mesoscopic "par
ticle plus environment" system is analyzed in the microcanonical ensemble b
y means of nonlinear-process projection methods, The ensuing generalized Kr
amers Fokker-Planck equation involves a thermodynamic potential of mean for
ce that is different from the canonical free energy, and the conditional en
tropy (or availability) emerges as the relevant steady-state potential. By
coupling the system to a heat bath, we provide a microscopic foundation for
the phenomenological theory of nonisothermal activation in mesoscopic syst
ems. In the second part of this article, we then prove the existence of an
availability potential governing the nonisothermal features of a Josephson
junction in a SQUID, by studying the Josephson internal energy (and entropy
) for T up arrow T-c in a model of two BCS superconductors coupled by a tun
neling Hamiltonian. The predicted periodic dependence of I:he junction's T-
c as a function of the flux in the SQUID has meanwhile been confirmed exper
imentally.