For both copies of a duplicated gene to become fixed in a population and su
bsequently maintained selection must favour individuals with both genes ove
r individuals with one. Here I review and assess some of the proposed ways
that gene structure and function might affect the likelihood of both copies
acquiring distinct functions and therefore positive selection. In particul
ar I focus on the interacting pathways of genes that make up gene networks,
and how these may affect genes duplicated both singly and en masse. Using
the Wnt and hedgehog pathways as examples and data from developmental and g
enome analyses, I show that, while some of these theories may genuinely ref
lect what has occurred in animal evolution, there are still insufficient da
ta to rigorously assess their relative importance. This, however, is likely
to change in the near future.