The Tetrahymena pre-rRNA self-splicing intron is shown to function in the u
nnatural context of an mRNA transcribed by RNA polymerase II in mammalian c
ells, Mutational analysis supports the conclusion that splicing in cells oc
curs by the same RNA-catalyzed mechanism established for splicing in vitro.
Insertion of the intron at five positions spanning the luciferase open rea
ding frame revealed 10-fold differences in accumulation of ligated exons an
d in luciferase activity; thus, the intron self-splices in many exon contex
ts, but the context can have a significant effect on activity. In addition,
even the best self-splicing constructs, which produced half as much mRNA a
s did an uninterrupted luciferase gene, gave similar to 100-fold less lucif
erase enzyme activity, revealing an unexpected discontinuity between mRNA p
roduction and translation in cells. The finding that production of accurate
ly spliced mRNA in cells does not guarantee a corresponding level of protei
n production is surprising, and may have implications for the development o
f traits-splicing ribozymes as therapeutics.