A novel Bayesian approach to replication studies, allowing for locus hetero
geneity, is introduced. Compared with currently used approaches to replicat
ion, it offers a natural way to accumulate evidence across independently co
llected data sets and yields more interpretable results. Using four replica
tes (one as initial study and the other three as replication studies) from
Problem 2 of the Genetic Analysis Workshop 11 data, we show the performance
of this method. All four disease susceptibility loci (D1G009, D1G024, D3G0
45, D5G035) are identified and accurately mapped, with no false positive si
gnals. (C) 1999 Wiley-Liss, Inc.