The mitochondrial cytochrome bc(1) complex is a multifunctional membrane pr
otein complex. It catalyzes electron transfer, proton translocation, peptid
e processing, and superoxide generation. Crystal structure data at 2.9 Angs
trom resolution not only establishes the location of the redox centers and
inhibitor binding sites, but also suggests a movement of the head domain of
the iron-sulfur protein (ISP) during bc(1) catalysis and inhibition of pep
tide-processing activity during complex maturation. The functional importan
ce of the movement of extramembrane (head) domain of ISP in the bc(1) compl
ex is confirmed by analysis of the Rhodobacter sphaeroides bc(1) complex mu
tants with increased rigidity in the ISP neck-and by the determination of r
ate constants for acid/base-induced intramolecular electron transfer betwee
n [2Fe-2S] and heme c(1) in native and inhibitor-loaded beef complexes. The
peptide-processing activity is activated in bovine heart mitochondrial bc(
1) complex by nonionic detergent at concentrations that inactivate electron
transfer activity. This peptide-processing activity is shown to be associa
ted with subunits and II by cloning, overexpression and in vitro reconstitu
tion. The superoxide-generation site of the cytochrome bc(1) complex is loc
ated at reduced b(L) and Q(.-). The reaction is membrane potential-, and cy
tochrome c-dependent.