The past decade has witnessed the ascendance of human genetics in modern me
dicine, and at the forefront of this movement is the identification of gene
tic factors underlying inherited diseases. The methods of genetic mapping a
nd positional cloning have made the discovery of genes with alleles that ca
use simple Mendelian diseases commonplace. The elucidation of the genetic b
asis of such disorders has vitalized both human genetics and the entire med
ical community as the field has gained prominence. The fact remains, howeve
r, that diseases resulting from the action of alleles of a single gene comp
rise only a minor percentage of traits that are medically relevant to human
ity. The majority of these are multifactorial "complex traits", which resul
t from the aggregate contribution of an unknown number of genes interacting
with each other and with the environment. The current challenge has become
one of parlaying successes in the mapping of Mendelian diseases into the d
iscovery of genes whose alleles predispose the development of a complex dis
ease. In light of this challenge, this review summarizes the methods and ad
dresses some of the central issues of complex trait mapping, while using ex
amples from dermatologically-relevant complex traits such as psoriasis and
alopecia. Additionally, current technical and theoretical advances as well
as the potential impact of the Human Genome Project will be discussed.