Background-Familial adenomatous polyposis (FAP) is caused by germline
mutation of the adenomatous polyposis coli (APC) gene on chromosome 5q
. Aims-This study assessed genotype-phenotype correlations for extrain
testinal lesions in FAP. Methods-Mutations of the APC gene were compar
ed with the occurrence of seven extraintestinal manifestations in 475
FAP patients from 51 families. The frequency of manifestations was adj
usted for different ages of patients using person years of exposure. I
n pedigrees without identified APC gene mutation, analysis of linkage
to chromosome 5q and/or assessment of neoplasms for replication errors
characteristic of mutation in mismatch repair genes were performed. R
esults-FAP patients from the 42 families (82%) with identified mutatio
ns of the APC gene had more frequent expression of extraintestinal man
ifestations than affected individuals without identified mutations (ri
sk ratio 1.2-4.0; significant difference for cutaneous cysts). The pre
sence of a cutaneous cyst or extraintestinal cancer significantly incr
eased the likelihood of detection of a mutation in the APC gene (94% a
nd 92% respectively; p < 0.05). In patients without identified APC gen
e mutation, linkage to the APC gene was found in one large family (lod
=5.1, theta 0.01), and replication error phenotype was absent in all 2
4 neoplasms from 16 members of these nine pedigrees. Expression pigmen
ted ocular fundus associated with strongly codons 541-1309, but no oth
er extraintestinal manifestations were related to mutation position. M
ultiplicity of extraintestinal manifestations was high with mutation i
n codons 1465, 1546, and 2621. Conclusions-Patients with the colorecta
l phenotype of FAP but no extraintestinal manifestations may have non-
truncating mutations of the APC gene or mutation in a gene other than
APC or mismatch repair genes. The site of APC gene mutation is associa
ted with pigmented ocular fundus lesions (codons 542-1309) and predisp
osition to multiplicity of extraintestinal manifestations (codons 1465
, 1546, and 2621).