Studies of noncoding and pseudogene sequence diversity, particularly in Ric
kettsia, have begun to reveal the basic principles of genome degradation in
microorganisms. Increasingly, studies of genes and genomes suggest that th
ere has been an extensive amount of horizontal gene transfer among microorg
anisms. As this inflow of genetic material does not seem generally to have
resulted in genome size expansions, however, degenerative processes must be
at the very least as widespread as horizontal gene transfer. The basic pri
nciples of gene degradation and elimination that are being explored in Rick
ettsia are likely to be of major importance for our understanding of how mi
crobial genomes evolve.