Recognition of the TATA box by the TATA-binding protein (TBP) is a highly r
egulated step in RNA polymerase II-dependent transcription. Several protein
s have been proposed to regulate TBP activity, yet the TBP domains responsi
ve to all these regulators have not been defined. Here we describe a new cl
ass of TBP mutants that increase transcription from core promoters in vivo.
The majority of these mutations alter amino acids that cluster tightly on
the TBP surface, defining a new TBP regulatory domain. The mutant TBP prote
ins are defective for binding the transcriptional regulator yNC2, are resis
tant to inhibition by yNC2 in vitro and exhibit allele-specific genetic int
eractions with yNC2. These results provide strong biochemical and genetic e
vidence that TBP is directly repressed ill vivo, and define a new TBP domai
n important for transcriptional regulation.