More than 20 complete prokaryotic genome sequences are now publicly availab
le, each by itself an unparalleled resource for understanding organismal bi
ology. Collectively, there data are even more powerful: they could force a
dramatic reworking of the framework in which we understand biological evolu
tion. It is possible that a single universal phylogenetic tree is not the b
est way to depict relationships between all Living and extinct species. Ins
tead a web- or net-like pattern, reflecting the importance of horizontal or
Lateral gene transfer between Lineages of organisms, might provide a more
appropriate visual metaphor. Here, I ask whether this way of thinking is re
ally justified, and explore its implications.