The granular layer of the developing and adult cerebellum is marked by the
presence of several transverse boundaries, revealed in gene expression patt
erns or as a consequence of genetic mutations, It is unclear whether these
boundaries represent fundamental differences between granule cell populatio
ns or if they are a secondary response to regional differences in the under
lying Purkinje cells. One possibility is that boundaries mark different spa
tial domains of granule cells in a lineage-dependent fashion. To test this
hypothesis, we have analysed a series of murine embryonic stem cell chimera
s marked by the constitutive expression of beta-galactosidase in donor gran
ule cells. The chimeras show a consistent spatial restriction boundary, loc
ated in the granular layer of lobule VI in the vermis and extending lateral
ly into crus I of the hemispheres. A second boundary was found separating l
obules IX and X in the vermis. No correlation was found between the genotyp
es of molecular layer interneurons and the underlying granule cells, sugges
ting that they arise independently. No transverse boundaries were observed
for the molecular layer interneurons, consistent with the hypothesis that t
hey are not generated from precursors in the external granular layer. These
results indicate that the granular layer of the cerebellum comprises cellu
lar domains with different histories separated by consistent spatial restri
ction boundaries.