MOLECULAR-DYNAMICS FOR POLYMERIC FLUIDS USING DISCONTINUOUS POTENTIALS

Citation
Sw. Smith et al., MOLECULAR-DYNAMICS FOR POLYMERIC FLUIDS USING DISCONTINUOUS POTENTIALS, Journal of computational physics, 134(1), 1997, pp. 16-30
Citations number
40
Categorie Soggetti
Mathematical Method, Physical Science","Computer Science Interdisciplinary Applications","Physycs, Mathematical
ISSN journal
00219991
Volume
134
Issue
1
Year of publication
1997
Pages
16 - 30
Database
ISI
SICI code
0021-9991(1997)134:1<16:MFPFUD>2.0.ZU;2-V
Abstract
Molecular dynamics simulation techniques for systems interacting with discontinuous potentials are discussed. Optimization and efficiency te chniques are summarized for performing discontinuous molecular dynamic s on serial computers with direct application to polymer-like fluids. Comparisons are presented for two algorithms: (1) single-event schedul ing, and (2) multiple-event scheduling. The single-event scheduling al gorithm is approximately 75% faster than the multiple-event scheduling algorithm for molecular fluids but yields equivalent performance for atomic fluids. For the single-event scheduling method, a combination o f link lists and neighbor lists are used when searching for possible p article interactions. The combination of efficiency techniques permits multibillion time step simulations for relatively large systems on de sktop workstations. Both discontinuous molecular dynamics codes for si ngle and multiple-event scheduling algorithms are available on the int ernet. The utility of the method is demonstrated for entangled chains, tethered chains, and heteronuclear chain mixtures. (C) 1997 Academic Press.