Protein interaction mapping using large-scale two-hybrid analysis has been
proposed as a way to functionally annotate large numbers of uncharacterized
proteins predicted by complete genome sequences. This approach was examine
d in Caenorhabditis elegans, starting with 27 proteins involved in vulval d
evelopment. The resulting map reveals both known and new potential interact
ions and provides a functional annotation for approximately 100 uncharacter
ized gene products. A protein interaction mapping project is now feasible f
or C. elegans on a genome-wide scale and should contribute to the understan
ding of molecular mechanisms in this organism and in human diseases.