Since 1998, the NSW Newborn Screening Program has used electrospray tandem
mass spectrometry (MS/MS) to analyse samples from all babies born in NSW an
d the ACT (approximately 95 000 per year) for selected amino acids and acyl
carnitines. The software rules editor initially interprets all results wher
e ratio of analyte to internal standard is modified by input from the exter
nal standard curves per analyte, The numerical results are then downloaded
to the NSW Newborn Screening database. which provides automatic, analyte sp
ecific follow-up test cascade. We have analysed samples from 137 120 consec
utive newborns received by the program, requested repeat samples from 122 b
abies, and found abnormal levels in 17 babies with phenylketonuria, 1 tetra
hydrobiopterin deficiency, 3 hyperphenylalaninaemia, 1 maple syrup urine di
sease, 1 tyrosinaemia type II, congenital lactic acidosis, 2 medium-chain a
cyl CoA dehydrogenase deficiency, 1 short-chain acyl CoA dehydrogenase defi
ciency, 1 beta-ketothiolase deficiency, 2 vitamin B12 deficient babies of v
egan mothers and 1 glutaric aciduria type I. Using population data plus tha
t obtained from retrospective samples with proven disorders we have establi
shed cutoff levels for each analyte tested. This coupled with the ability o
f the database to provide ratios of various analytes gives excellent screen
ing specificity and sensitivity for the detection of at least 40 rare inbor
n errors of metabolism.