Stretching DNA: Role of electrostatic interactions

Citation
N. Lee et D. Thirumalai, Stretching DNA: Role of electrostatic interactions, EUR PHY J B, 12(4), 1999, pp. 599-605
Citations number
23
Categorie Soggetti
Apllied Physucs/Condensed Matter/Materiales Science
Journal title
EUROPEAN PHYSICAL JOURNAL B
ISSN journal
14346028 → ACNP
Volume
12
Issue
4
Year of publication
1999
Pages
599 - 605
Database
ISI
SICI code
1434-6028(199912)12:4<599:SDROEI>2.0.ZU;2-K
Abstract
The effect of electrostatic interactions on the stretching of DNA is invest igated using a simple worm like chain model. In the limit of small force th ere are large conformational fluctuations which are treated using a self-co nsistent variational approach. For small values of the external force f, we find the extension scales as fr(D) where r(D) is the Debye screening lengt h. In the limit of large force the electrostatic effects can be accounted f or within the semiflexible chain model of DNA by assuming that only small e xcursions from rod-like conformations are possible. In this regime the exte nsion approaches the contour length as 1/root f where f is the magnitude of the external force. The theory is used to analyze experiments that have me asured the extension of double-stranded DNA subject to tension at various s alt concentrations. The theory reproduces nearly quantitatively the elastic response of DNA at small and large values of f and for all concentration o f the monovalent counterions. The limitations of the theory are also pointe d out.