Heart rate variability (HRV) measures are associated with coronary heart di
sease incidence and mortality. Therefore insight into the genetic and envir
onmental determinants of these measures may have clinical relevance. We ass
essed the role of genetic and environmental factors of time domain and freq
uency domain HRV indices. Participants were 451 kibbutz members, aged 15 an
d up, belonging to 80 families. HRV indices were calculated from Holter rec
ordings measured over 5 min. Our data indicate that for the two time- and f
our frequency domain indices, a mixture of two normal distributions fit the
data significantly better than a single normal distribution (P<0.05). We u
sed complex segregation analysis to infer the modes of inheritance of these
HRV measures. We found evidence for possible involvement of a recessive ma
jor gene in the inheritance of the root mean square of successive differenc
es in RR intervals (RMSSD), which is predominantly vagally mediated. A puta
tive major gene explains 28%-34% of the adjusted inter-individual variabili
ty. The SD, determined by a mixture of mechanisms, is influenced by environ
mental and polygenic effects, but: not by a major gene. The findings regard
ing the heritability of the frequency domain indices were not conclusive. H
owever, the involvement of genetic factors was not rejected. Additional stu
dies in extended families are needed to confirm the involvement of major ge
nes in the determination of the autonomic activity.