Using a recently developed scheme for performing, within density functional
theory, molecular dynamics and geometry optimization for fairly large syst
ems in the first excited singlet state, we have studied the structure and e
nergy changes that the rhodopsin chromophore undergoes during the photoisom
erization from 11-cis to all-trans. We discuss the effects df relevant part
s of the protein environment close to the chromophore on the isomerization
barrier;md on the chromophore structure.