Autocatalytic activation of initiator caspases is the link between pro-apop
totic signals and the destruction machinery of apoptosis. Activation of cas
pase-9, which mediates oncogene and drug-induced apoptosis, requires bindin
g to the protein APAF-1. We found that the proteolytic activity of caspase-
9 in a complex with APAF-1 is several orders of magnitude higher than that
of the free enzyme. Thus, this complex functions as a holoenzyme in which c
aspase-9 is the catalytic subunit and APAF-1 its allosteric regulator. We a
rgue that caspase-9 is activated by allosteric regulation and suggest that
this mechanism is common for other initiator caspases.