The eyes absent (eya) gene is critical for normal eye development in Drosop
hila and is highly conserved to vertebrates. To define regions of the gene
critical for eye function, we have defined the mutations in the four viable
eya alleles. Two of these mutations are eye specific and undergo transvect
ion with other mutations in the gene. These were found to be deletion mutat
ions that remove regulatory sequence critical for eye cell expression of th
e gene. Two other viable alleles cause a reduced eye phenotype and affect t
he function of the gene in additional tissues, such as the ocelli. These mu
tations were found to be insertion mutations of different transposable elem
ents within the 5' UTR of the transcript. Detailed analysis of one of these
revealed that the transposable element has become subject to regulation by
eye enhancer sequences of the eya gene, disrupting normal expression of EY
A in the eye. More extruded analysis of the deletion region in the eye-spec
ific alleles indicated that the deleted region defines an enhancer that act
ivates gene expression in eye progenitor cells. This enhancer is responsive
to ectopic expression of the eyeless gene. This analysis has defined a cri
tical regulatory region required for proper eye expression of the eya gene.