Phytoplankton respond to variations in light intensity as they are mixed th
rough the water column. Changes in pigment content are characteristic of th
e relatively slow response of 'sun-shade' photoacclimation that occurs on t
imescales typical of mixing in the open ocean. In estuaries, the variations
are much faster and induce correspondingly rapid changes in the activity (
rather than abundance) of different components of the photosynthetic appara
tus. These components modulate light harvesting and Calvin cycle activity,
or protect the pigment bed from excess energy absorption. When the protecti
ve capacity is exceeded, photoinhibition occurs. All these mechanisms modul
ate the rate of photosynthesis in situ.