We present the application of Cascade Correlation for structures to QSPR (q
uantitative structure-property relationships) and QSAR (quantitative struct
ure-activity relationships) analysis. Cascade Correlation for structures is
a neural network model recently proposed for the processing of structured
data. This allows the direct treatment of chemical compounds as labeled tre
es, which constitutes a novel approach to QSPR/QSAR. We report the results
obtained for QSPR on Alkanes (predicting the boiling point) and QSAR of a c
lass of Benzodiazepines. Our approach compares favorably versus the traditi
onal QSAR treatment based on equations and it is competitive with 'ad hoc'
MLPs for the QSPR problem.