Buffered Ca2+ diffusion in the cytosol of neuroendocrine cells is a plausib
le explanation for the slowness and latency in the secretion of hormones. W
e have developed a Monte Carlo simulation to treat the problem of 3-D diffu
sion and kinetic reactions of ions and buffers. The 3-D diffusion is modele
d as a random walk process that follows the path of each ion and buffer mol
ecule, combined locally with a stochastic treatment of the first-order kine
tic reactions involved. Such modeling is able to predict [Ca2+] and buffer
concentration time courses regardless of how low the calcium influx is, and
it is therefore a convenient method for dealing with physiological calcium
currents and concentrations. We study the effects of the diffusional and k
inetic parameters of the model on the concentration time courses as well as
on the local equilibrium of buffers with calcium. An in-mobile and fast en
dogenous buffer as described by Klingauf and Neher (1997, Biophys. J. 72:67
4-690) was able to reach local equilibrium with calcium; however, the exoge
nous buffers considered are displaced drastically from equilibrium at the s
tart of the calcium pulse, particularly below the pores. The versatility of
the method also allows the effect of different arrangements of calcium cha
nnels on submembrane gradients to be studied, including random distribution
of calcium channels and channel clusters. The simulation shows how the par
ticular distribution of channels or clusters can be of relevance for secret
ion in the case where the distribution of release granules is correlated wi
th the channels or clusters.