One of the most puzzling problems of endometriosis is determining which mec
hanisms link this spectrum of conditions to infertility. There is conflicti
ng evidence about the effect of endometriosis on the endometrium and on ooc
yte/embryo quality. Clinical studies reveal that implantation rates seem to
be lower in women with endometriosis, while spontaneous abortion rates sho
w variable results which are difficult to interpret due to the design of th
e studies. Biochemical markers (integrins and other cell adhesion molecules
), morphological markers (pinopodes), apoptosis and ultrasound studies conf
irm that not only does the endometrium from women with endometriosis behave
differently from the endometrium of women without endometriosis, but ectop
ic endometrium also behaves differently from eutopic endometrium, Data from
oocyte donation programmes suggest that oocyte quality may be hampered in
women with endometriosis, Recent reports have focused on the molecular mech
anisms that may be altered, such as ovarian steroid production, or inadequa
te luteal function. In this review, we analyse the most recent literature d
ealing with the different mechanisms which affect the endometrium and oocyt
e/embryo quality and which thereby might cause infertility.