Proteins and other biomolecules undergo a dynamic transition near 200 K to
a glass-like solid state with small atomic fluctuations. This dynamic trans
ition can inhibit biological function. To provide a deeper understanding of
the relative importance of solvent mobility and the intrinsic protein ener
gy surface in the transition, a novel molecular dynamics simulation procedu
re with the protein and solvent at different temperatures has been used. So
lvent mobility is shown to be the dominant factor in determining the atomic
fluctuations above 180 K, although intrinsic protein effects become import
ant at lower temperatures. The simulations thus complement experimental stu
dies by demonstrating the essential role of solvent in controlling function
ally important protein fluctuations.