B. Nogales et al., Identification of the metabolically active members of a bacterial community in a polychlorinated biphenyl polluted moorland soil, ENVIRON MIC, 1(3), 1999, pp. 199-212
The presumptive metabolically active members of a bacterial community in a
moorland soil in Germany, highly polluted with polychlorinated biphenyls (P
CBs), were identified by sequencing of cloned reverse transcription-polymer
ase chain reaction (RT-PCR) amplification products of 16S rRNA generated fr
om total RNA extracts, Analysis of the 16S rRNA clone library revealed a co
nsiderable diversity of metabolically active bacteria in the soil, despite
the acidic pH and high concentrations of PCBs, Cloned sequence types cluste
red within the Proteobacteria (34% alpha-, 33% beta- and 7% gamma-subclasse
s), the Holo-phaga-Acidobacterium phylum (14%), the Actinobacteria (6.5%) a
nd the Planctomycetales (2%), Three cloned sequence types were not affiliat
ed to any described phylogenetic group. An unusual feature of this soil was
the abundance of sequence types within the beta-subclass of the Proteobact
eria, most of which were similar to the 16S rRNA gene sequences of species
from only two genera, Burkholderia and Variovorax. Three other numerous 16S
rRNA sequence types were similar to the sequences of Sphingomonas species,
members of the Rhodopila globiformis group and Acidobacterium capsulatum,
Some of the sequence types retrieved were similar to the 16S rRNA sequences
of bacterial isolates able to degrade a variety of organic pollutants, inc
luding PCBs, As the PCB contamination is the major source of measurable car
bon in this soil, some of the 16S rRNA sequence types detected and presumed
to represent the metabolically active members of the community indicate th
e organisms likely to be involved, directly or indirectly, in the utilizati
on of the PCBs as carbon and energy sources.