T. Suzuki et al., Formation of 2 '-deoxyoxanosine from 2 '-deoxyguanosine and nitrous acid: mechanism and intermediates, NUCL ACID R, 28(2), 2000, pp. 544-551
The reaction mechanism for the formation of 2'-deoxyoxanosine from 2'-deoxy
guanosine by nitrous acid was explored using methyl derivatives of guanosin
e and an isolated intermediate of the reaction, When 2-methylguanosine was
incubated with NaNO2 under acidic conditions, N-5-methyloxanosine and 1-met
hylxanthosine were generated, whereas the same treatment of N-2,N-2-dimethy
lguanosine generated no product, In a similar experiment without NO2-, part
icipation of a Dimroth rearrangement was ruled out. In the guanosine-HNO2 r
eaction system, an intermediate with a half-life of 5.6 min (pH 7.0, 20 deg
rees C) was isolated and tentatively identified as a diazoate derivative of
guanosine, The diazoate intermediate was converted into oxanosine and xant
hosine at a molar ratio (oxanosine:xanthosine) of 0.26 at pH 7.0 and 20 deg
rees C, The ratio was not affected by the incubation pH between 2 and 10, b
ut increased linearly with temperature from 0.22 (0 degrees C) to 0.32 (50
degrees C), The addition of acetone also increased the ratio up to 0.85 (98
% acetone), Based on these results, a con-ceivable pathway for the formatio
n of 2'-deoxyoxanosine from 2'-deoxyguanosine by HNO2 is proposed.