Sk. Morris et al., Steady-state and rapid kinetic analysis of topoisomerase II trapped as theclosed-clamp intermediate by ICRF-193, J BIOL CHEM, 275(4), 2000, pp. 2613-2618
DNA topoisomerase II uses a complex, sequential mechanism of ATP hydrolysis
to catalyze the transport of one DNA duplex through a transient break in a
nother. ICRF-193 is a catalytic inhibitor of topoisomerase II that is known
to trap a closed-clamp intermediate form of the enzyme, Using steady-state
and rapid kinetic ATPase and DNA transport assays, we have analyzed how tr
apping this intermediate by the drug perturbs the topoisomerase II mechanis
m. The drug has no effect on the rate of the first turnover of decatenation
but potently inhibits subsequent turnovers with an IC50 of 6.5 +/- 1 mu w
for the Saccharomyces cerevisiae enzyme. This drug inhibits the ATPase acti
vity of topoisomerase II by an unusual, mixed-type mechanism; the drug is n
ot a competitive inhibitor of ATP, and even at saturating concentrations of
drug, the enzyme continues to hydrolyze ATP, albeit at a reduced rate. Top
oisomerase II that was specifically isolated in the drug-bound, closed-clam
p form continues to hydrolyze ATP, indicating that the enzyme clamp does no
t need to re-open to bind and hydrolyze ATP, When rapid-quench ATPase assay
s were initiated by the addition of ATP, the drug had no effect on the sequ
ential hydrolysis of either the first or second ATP, By contrast, when the
drug was prebound, the enzyme hydrolyzed one labeled ATP at the uninhibited
rate but did not hydrolyze a second ATP, These results are interpreted in
terms of the catalytic mechanism for topoisomerase II and suggest that ICRF
-193 interacts with the enzyme bound to one ADP.