The extensive use of molecular cytogenetics in human genetics and clin
ical diagnostics indicates that analogous applications in plants are h
ighly feasible. One sort of application would be the identification of
new aneuploids, which traditionally involves either direct karyotypic
identification. which is feasible in only a few plant species, or tes
ts with markers (cytogenetic, genetic, or molecular), which require se
xual hybridization and at least one subsequent seed or plant generatio
n. We have used meiotic fluorescence in situ hybridization (FISH) to a
nalyze a new monosome of cotton (Gossypium hirsutum L., 2n=4x=52, 2(AD
)(1)) that had a phenotype which seemed to be distinct from monosomes
in the Cotton Cytogenetic Collection. Painting with A(2)-genome DNA re
vealed the monosome's D-subgenome origin. DAPI-PI staining showed that
the monosome carries a major NOR, delimiting it to the major NOR-bear
ing chromosomes of the D-subgenome, i.e., 16 or 23. Dual-color FISH wi
th 5S and 18S-28S rDNAs indicated that the monosome contains separate
major clusters of each of these two tandemly repeated rDNA elements, t
hus delimiting the monosome to chromosome 23, for which the Cotton Cyt
ogenetic Collection has previously been devoid of any sort of deficien
cy. Of the 26 chromosomes in the cotton genome, the Collection now pro
vides coverage for 16 (70%) in the form of monosomy, and 20 (77%) in t
he form of monosomy and (or) telosomy. Use of molecular cytogenetic me
thods to identify a new plant aneuploid in cotton exemplifies the fact
that a physicochemical karyotypic chromosome identification system is
not required a priori for application of new molecular cytogenetic me
thods, thus indicating their potential applicability to nearly all pla
nt species.