We find the Seiberg-Witten geometry for four dimensional N = 2 supersymmetr
ic E-6 gauge theories with massless fundamental hypermultiplets, by geometr
ically embedding them in type II string theories compactified on Calabi-Yau
threefolds. The resulting geometry completely agrees with that of recent w
orks, which are based on the technique of N = 1 confining phase superpotent
ials. We also derive the Seiberg-Witten geometry for E-7 gauge theories wit
h massive fundamental hypermultiplets.