Modular polyketide synthases are giant multifunctional enzymes that catalys
e the condensation of small carboxylic acids such as acetate and propionate
into structurally diverse polyketides that possess a spectrum of biologica
l activities(1,2). In a modular polyketide synthase, an enzymatic domain ca
talyses a specific reaction, and three to six enzymatic domains involved in
a condensation-processing cycle are organized into a module(3). A fundamen
tal aspect of a modular polyketide synthase is that its module arrangement
linearly specifies the structure of its polyketide product(3). Here we repo
rt a natural example in which alternative expression of the pikromycin poly
ketide synthase results in the generation of two macrolactone structures. E
xpression of the full-length modular polyketide synthase PikAIV in Streptom
yces venezuelae generates the 11-membered ring macrolactone narbonolide, wh
ereas expression of the amino-terminal truncated form of PikAIV leads to 's
kipping' of the final condensation cycle in polyketide biosynthesis to gene
rate the 12-membered ring macrolactone 10-deoxymethynolide. Our findings pr
ovide insight into the structure and function of modular polyketide synthas
es, as well as a new set of tools to generate structural diversity in polyk
etide natural products.