To accelerate the biological annotation of novel genes discovered in sequen
ced regions of mammalian genomes, we are creating large deletions in the mo
use genome targeted to include clusters of such genes. Here we describe the
targeted deletion of a 450-kb region on mouse chromosome 11, which, based
on computational analysis of the deleted murine sequences and human 5q orth
ologous sequences, codes for nine putative genes. Mice homozygous for the d
eletion had a variety of abnormalities, including severe hypertriglyceridem
ia. hepatic and cardiac enlargement, growth retardation, and premature mort
ality. Analysis of triglyceride metabolism in these animals demonstrated a
several-fold increase in hepatic very-low density lipoprotein triglyceride
secretion, the most prevalent mechanism responsible for hypertriglyceridemi
a in humans. A series of mouse BAC and human YAC transgenes covering differ
ent intervals of the 450-kb deleted region were assessed for their ability
to complement the deletion induced abnormalities. These studies revealed th
at OCTN2, a gene recently shown to play a role in carnitine transport, was
able to correct the triglyceride abnormalities. The discovery of this previ
ously unappreciated relationship between OCTN2, carnitine, and hepatic trig
lyceride production is of particular importance because of the clinical con
sequence of hypertriglyceridemia and the paucity of genes known to modulate
triglyceride secretion.