We conducted genetic analyses of Aleutian Canada Geese (Branta canadensis l
eucopareia) from Buldir Island in the western Aleutians and the Semidi Isla
nds in the eastern portion of their breeding range. We compared data from s
even microsatellite DNA loci and 143 base pairs of the control region of mi
tochondrial DNA from the two populations of Aleutian Canada Geese and anoth
er small-bodied subspecies, the Cackling Canada Goose (B. c, minima) which
nests in western Alaska. The widely separated island-nesting Aleutian geese
were genetically more closely related to each other than to mainland-nesti
ng small-bodied geese. The populations of Aleutian geese were genetically d
ifferentiated from one another in terms of mitochondrial DNA haplotype and
microsatellite allele frequencies, suggesting limited contemporary gene flo
w and/or major shifts in gene frequency through genetic drift. The degree o
f population genetic differentiation suggests that Aleutian Canada Goose po
pulations could be considered separate management units. There was some evi
dence of population bottlenecks, although we found no significant genetic e
vidence of nonrandom mating or inbreeding.