Two major advances have been made in the computational perception and utili
zation of pharmacophores in compound libraries, both real and virtual. Firs
tly, a hierarchical set of filtering calculations has emerged that can be u
sed to efficiently partition a library into a trial set of pharmacophores.
This sequential filtering permits large libraries to be efficiently process
ed, as well as compounds judged as 'hits' to be analyzed in great detail. S
econdly, new and extended methods of QSAR (quantitative structure-activity
relationship) analysis have evolved to translate pharmacophore information
into QSAR models that, in turn, can be used as virtual high-throughput scre
ens for activity profiling of a library.