Phosphorylation of transcription factors is a key link between cell signali
ng and the control of gene expression. Here we report that phosphorylation
regulates DNA binding of the Ets-l transcription factor by reinforcing an a
utoinhibitory mechanism. Quantitative DNA-binding assays show that calcium-
dependent phosphorylation inhibits Ets-1 DNA binding 50-fold. The four seri
nes that mediate this inhibitory effect are distant from the DNA-binding do
main but near structural elements required for autoinhibition. Mutational a
nalyses demonstrate that an intact inhibitory module is required for phosph
orylation-dependent regulation. Partial proteolysis studies indicate that p
hosphorylation stabilizes an inhibitory conformation. These findings provid
e a structural mechanism for phosphorylation-dependent inhibition of Ets-1
DNA binding and demonstrate a new function for inhibitory modules as struct
ural mediators of negative signaling events.