The signal recognition particle (SRP), a protein-RNA complex conserved in a
ll three kingdoms of Life, recognizes and transports specific proteins to c
ellular membranes for insertion or secretion. We describe here the 1.8 angs
trom crystal structure of the universal core of the SRP, revealing protein
recognition of a distorted RNA minor groove. Nucleotide analog interference
mapping demonstrates the biological importance of observed interactions, a
nd genetic results show that this core is functional in vivo. The structure
explains why the conserved residues in the protein and RNA are required fo
r SRP assembly and defines a signal sequence recognition surface composed o
f both protein and RNA.