Recent numerical simulations have lead to a paradigm shift in our understan
ding of the intergalactic medium and the loss of a physical justification f
or Voigt profile fitting of the Ly alpha forest. Many individual lines seen
in simulated spectra have significant departures from the Voigt profile, y
et could be well fitted by a blend of two or more such lines. We discuss th
e expected effect on the line profiles due to ongoing gravitational structu
re formation and Hubble expansion. We develop a method to detect departures
from Voigt profiles of the absorption lines in a statistical way and apply
this method to simulated Ly alpha forest spectra, confirming that the prof
iles seen do statistically differ from Voigt profiles.