This article reviews the molecular lesions that occur in the clonal hematop
oietic disorders classified as myelodysplastic syndromes (MDS). A systemati
zation of these molecular lesions is attempted based on the types of molecu
lar abnormalities. Characteristically, these molecular lesions affect pluri
potent hematopoietic progenitors and therefore affect myeloid, monocytic, e
rythroid, and megakaryocytic lineages. Progression of MDS to acute myelogen
ous leukemia is common; transformation is considered the final stage in the
multi-step process of accumulation of molecular lesions over a prolonged l
atency period of MDS evolution. Although no molecular lesion is MDS specifi
c, multiple combinations of molecular lesions are common and a systematic a
pproach based on the type of molecular abnormality may offer a better under
standing of MDS pathogenesis and the basis for new therapeutic strategies.