The winged helix proteins constitute a subfamily within the large ensemble
of helix-turn-helix proteins. Since the discovery of the winged helix/fork
head motif in 1993, a large number of topologically related proteins with d
iverse biological functions have been characterized by X-ray crystallograph
y and solution NMR spectroscopy. Recently, a winged helix transcription fac
tor (RFX1) was shown to bind DNA using unprecedented interactions between o
ne of its eponymous wings and the major groove. This surprising observation
suggests that the winged helix proteins can be subdivided into at least tw
o classes with radically different modes of DNA recognition.