An understanding of how the nuclear pore complex (NPC) mediates nucleocytop
lasmic exchange requires a comprehensive inventory of the molecular compone
nts of the NPC and a knowledge of how each component contributes to the ove
rall structure of this large molecular translocation machine, Therefore, we
have taken a comprehensive approach to classify all components of the yeas
t NPC (nucleoporins),This involved identifying all the proteins present in
a highly enriched NPC fraction, determining which of these proteins were nu
cleoporins, and localizing each nucleoporin within the NPC, Using these dat
a, we present a map of the molecular architecture of the yeast NPC and prov
ide evidence for a Brownian affinity gating mechanism for nucleocytoplasmic
transport.