B chromosomes are extra chromosomes to the standard complement that occur i
n many organisms. They can originate in a number of ways including derivati
on from autosomes and sex chromosomes in intra- and interspecies crosses. T
heir subsequent molecular evolution resembles that of univalent sex chromos
omes, which involves gene silencing, heterochromatinization and the accumul
ation of repetitive DNA and transposons. B-chromosome frequencies in popula
tions result from a balance between their transmission rates and their effe
cts on host fitness. Their long-term evolution is considered to be the outc
ome of selection on the host genome to eliminate B chromosomes or suppress
their effects and on the B chromosome's ability to escape through the gener
ation of new variants. Because B chromosomes interact with the standard chr
omosomes, they can play an important role in genome evolution and may be us
eful for studying molecular evolutionary processes.