The Pleistocene was a dynamic period for Holarctic mammal species, complica
ted by episodes of glaciation, local extinctions, and intercontinental migr
ation. The genetic consequences of these events are difficult to resolve fr
om the study of present-day populations. To provide a direct view of popula
tion genetics in the late Pleistocene, we measured mitochondrial DNA sequen
ce variation in seven permafrost-preserved brown bear (Ursus arctos) specim
ens, dated from 14,000 to 42,000 years ago. Approximately 36,000 years ago,
the Beringian brown bear population had a higher genetic diversity than an
y extant North American population, but by 15,000 years ago genetic diversi
ty appears similar to the modern day. The older, genetically diverse. Berin
gian population contained sequences from three clades now restricted to loc
al regions within North America, indicating that current phylogeographic pa
tterns may provide misleading data for evolutionary studies and conservatio
n management. The late Pleistocene phylogeographic data also indicate possi
ble colonization routes to areas south of the Cordilleran ice sheet.