The high affinity energetics in the streptavidin-biotin system provide an e
xcellent model system for studying how proteins balance enthalpic and entro
pic components to generate an impressive overall free energy for ligand bin
ding. We review here concerted site-directed mutagenesis, biophysical, and
computational studies of aromatic and hydrogen bonding interaction energeti
cs between streptavidin and biotin. These results also have provided insigh
t into how streptavidin builds a large activation barrier to dissociation b
y managing the enthalpic and entropic activation components. Finally, we re
view recent studies of the biotin dissociation pathway that address the fun
damental question of how ligands exit protein binding pockets. (C) 1999 Pub
lished by Elsevier Science B.V. All rights reserved.