This paper briefly reviews the nomenclature and application of stress prote
ins as biomarkers, then gives a step by step description of the popular met
hodologies used to measure stress protein in plant and animal tissues toget
her with a critic of each approach and trouble shooting tips. Stress protei
ns (previously termed "heat shock proteins") are induced by many environmen
tal stresses including exposure to trace metals or organic pollutants, chan
ges in temperature or osmolarity, hypoxia/anoxia, and exposure to ultraviol
et radiation. Stress proteins, especially hsp70 and hsp60, have been used a
s biomarkers in a range of algae, invertebrates, fish, and higher vertebrat
es. Several suggestions are made to improve the utility of stress proteins
as a biomarker of exposure e.g., consideration of the kinetics of stress pr
otein induction relative to the pharmacokinetics of pollutant accumulation
in the organism of concern, and selection of the type of stress protein for
biomonitoring. The methodologies described include sample preparation, wes
tern blotting, slot blotting, and antibody detection methods, especially fo
r hsp70. Western blotting has been the most widely applied technique for as
saying stress proteins but dot/slot blotting with the inclusion of an inter
nal standard in each gel improves the approach by simplifying the technique
-saving time and materials and producing a more quantitative result.