The conformational preferences of the Hoechst 33258 agent were studied
with ab initio, semiempirical molecular orbital, electrostatic calcul
ations and by Monte Carlo free energy simulations with explicit solven
t representation using the adaptive umbrella sampling method. The semi
empirical approach to calculating the solvation free energies was foun
d in qualitative agreement with the Monte Carlo result. The optimal co
nformation in the solvent was found to be close to the previously calc
ulated optimal conformation for binding. (C) 1997 Elsevier Science B.V
.