Structure of a closed form of human malic enzyme and implications for catalytic mechanism

Malic enzymes are widely distributed in nature and have many biological fun ctions. The crystal structure of human mitochondrial NAD(P)(+)-dependent ma lic enzyme in a quaternary complex with NAD(+), Mn++ and oxalate has been d etermined at 2.2 Angstrom resolution. The structures of the quaternary comp lex with NAD(+), Mg++, tartronate or ketomalonate have been determined at 2 .6 Angstrom resolution. The structures show the enzyme in a closed form in these complexes and reveal the binding modes of the cation and the inhibito rs, The divalent cation is coordinated in an octahedral fashion by six liga ting oxygens, two from the substrate/inhibitor, three from Glu 255, Asp 256 and Asp 279 of the enzyme, and one from a water molecule. The structural i nformation has significant implications for the catalytic mechanism of mali c enzymes and identifies Tyr 112 and Lys 183 as possible catalytic residues . Changes in tetramer organization of the enzyme are also observed in these complexes, which might be relevant for its cooperative behavior and allost eric control.