A mechanistic model was developed, to simulate the main facets of photoinhi
bition in phytoplankton. Photoinhibition is modelled as a time dependent de
crease in the initial slope of a photosynthesis versus irradiance curve, re
lated to D1 (photosystem II reaction centre protein) damage and non-photoch
emical quenching. The photoinhibition model was incorporated into an existi
ng ammonium-nitrate nutrition interaction model capable of simulating photo
acclimation and aspects of nitrogen uptake and utilization. Hence the curre
nt model can simulate the effects of irradiance on photosynthesis from sub-
saturating to inhibitory photon flux densities, during growth on different
nitrogen sources and under nutrient stress. Model output conforms well to e
xperimental data, allowing the extent of photoinhibition to be predicted un
der a range of nutrient and light regimes. The ability of the model to recr
eate the afternoon depression of photosynthesis and the enhancement of phot
osynthesis during fluctuating light suggests that these two processes are r
elated to photoinhibition. The model may be used to predict changes in biom
ass and/or carbon fixation under a wide range of oceanographic situations,
and it may also help to explain the progression to dominance of certain alg
al species, and bloom formation under defined irradiance and nutrient condi
tions.