Modern drug discovery often involves screening small molecules for their ab
ility to bind to a preselected protein target. Target-oriented syntheses of
these small molecules, individually or as collections (focused Libraries),
can be planned effectively with retrosynthetic analysis. Drug discovery ca
n also involve screening small molecules for their ability to modulate a bi
ological pathway in cells or organisms, without regard for any particular p
rotein target. This process is Likely to benefit in the future from an evol
ving forward analysis of synthetic pathways, used in diversity-oriented syn
thesis, that Leads to structurally complex and diverse small molecules. One
goal of diversity-oriented syntheses is to synthesize efficiently a collec
tion of small molecules capable of perturbing any disease-related biologica
l pathway, Leading eventually to the identification of therapeutic protein
targets capable of being modulated by small molecules. Several synthetic pl
anning principles for diversity-oriented synthesis and their role in the dr
ug discovery process are presented in this review.