A longstanding question in T cell receptor signaling is how structurally si
milar ligands, with similar affinities, can have substantially different bi
ological activity. The crystal structure of the 2C TCR complex of H-2K(b) w
ith superagonist peptide SIYR at 2.8 Angstrom elucidates a structural basis
for TCR discrimination of altered peptide ligands. The difference in antig
en potency is modulated by two cavities in the TCR combining site, formed m
ainly by CDRs 3 alpha, 3 beta, and 1 beta, that complement centrally locate
d peptide residues. This "functional hot spot" allows the TCR to finely dis
criminate amongst energetically similar interactions within different ligan
ds for those in which the peptide appropriately stabilizes the TCR/pMHC com
plex and provides a new structural perspective for understanding differenti
al signaling resulting from T cell cross-reactivity.